STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G5I9_PHYRMPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)    
Predicted Functional Partners:
H3GMW6_PHYRM
Uncharacterized protein; Belongs to the peptidase C1 family.
    
 
 0.893
H3G7J3_PHYRM
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.819
H3GAE9_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.787
H3G9H3_PHYRM
Suf domain-containing protein.
    
 0.786
H3G7Z2_PHYRM
SKIP_SNW domain-containing protein.
    
 0.783
H3H5G1_PHYRM
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.779
H3GUK7_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.763
H3H0T8_PHYRM
Nucleoporin_N domain-containing protein.
    
 0.762
H3GH72_PHYRM
Uncharacterized protein.
    
 0.751
H3GJM7_PHYRM
RanBP2-type domain-containing protein.
    
 0.747
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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