STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G5N7_PHYRMUncharacterized protein. (1225 aa)    
Predicted Functional Partners:
H3GWA7_PHYRM
Uncharacterized protein.
   
 0.667
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
 0.608
H3G847_PHYRM
Uncharacterized protein; Belongs to the peptidase M16 family.
    
 0.577
H3GTT4_PHYRM
Uncharacterized protein; Belongs to the syntaxin family.
    
 0.521
H3G9B0_PHYRM
Uncharacterized protein.
    
  0.508
H3GLH3_PHYRM
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
  0.507
H3G7S9_PHYRM
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
    
 0.502
H3GA27_PHYRM
Uncharacterized protein.
    
 0.502
H3GZU7_PHYRM
VWFA domain-containing protein.
    
  0.502
H3G7T3_PHYRM
MPN domain-containing protein.
    
  0.501
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.