STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G612_PHYRMAA_TRNA_LIGASE_II domain-containing protein. (587 aa)    
Predicted Functional Partners:
H3GGY8_PHYRM
Ribosomal_L18e/L15P domain-containing protein.
   
 
 0.935
H3G4Y3_PHYRM
Uncharacterized protein.
   
 
 0.929
H3G899_PHYRM
Uncharacterized protein.
   
 
 0.921
H3G9B7_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.920
H3GBT9_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.914
H3GR76_PHYRM
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 
0.902
H3GAM0_PHYRM
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 
 0.881
H3GU44_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.870
H3G5H3_PHYRM
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.855
H3H027_PHYRM
Uncharacterized protein.
  
 
 0.853
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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