STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G6D2_PHYRMtRNA-dihydrouridine(47) synthase [NAD(P)(+)]. (524 aa)    
Predicted Functional Partners:
H3G5N2_PHYRM
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
    0.812
H3GN45_PHYRM
Uncharacterized protein.
   
    0.749
H3GC19_PHYRM
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
  
 0.748
H3GLH2_PHYRM
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.721
H3GBC9_PHYRM
Uncharacterized protein.
   
 
 0.702
H3GIT0_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
 
 0.664
H3G9W7_PHYRM
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
  
 0.658
H3GMB8_PHYRM
PseudoU_synth_1 domain-containing protein.
   
 
 0.649
H3GSS2_PHYRM
PseudoU_synth_1 domain-containing protein.
   
 
 0.649
H3G7A1_PHYRM
tRNA (adenine(58)-N(1))-methyltransferase.
   
  
 0.647
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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