STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G7C3_PHYRMLeuk-A4-hydro_C domain-containing protein. (560 aa)    
Predicted Functional Partners:
H3GUW2_PHYRM
Leuk-A4-hydro_C domain-containing protein.
  
  
 
0.843
H3G9S1_PHYRM
Aspartate aminotransferase.
    
 0.567
H3G5G6_PHYRM
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
    
  0.546
H3G707_PHYRM
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
  0.543
H3G8T9_PHYRM
Ubiquitin-like domain-containing protein.
    
  0.541
H3GWJ5_PHYRM
M20_dimer domain-containing protein.
   
 0.541
H3GWJ6_PHYRM
M20_dimer domain-containing protein.
   
 0.541
H3G8V9_PHYRM
PALP domain-containing protein.
     
 0.537
H3GBC6_PHYRM
Uncharacterized protein; Belongs to the TrpA family.
     
 0.537
H3GWR0_PHYRM
TSPc domain-containing protein.
    
 0.533
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.