H3G7H0_PHYRM protein (Phytophthora ramorum) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

H3G7H0_PHYRM

Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (809 aa)

Predicted Functional Partners:

H3G7T4_PHYRM

0.858

H3GAQ3_PHYRM

0.838

H3H4A7_PHYRM

0.837

H3GV59_PHYRM

0.798

H3H0V1_PHYRM

0.792

H3GIT1_PHYRM

0.781

H3H0Y2_PHYRM

0.781

H3H763_PHYRM

0.781

H3H8Z1_PHYRM

0.781

H3GAD8_PHYRM

0.768

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G7H0_PHYRM	H3G7T4_PHYRM	H3G7H0	H3G7T4	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.858
H3G7H0_PHYRM	H3GAD8_PHYRM	H3G7H0	H3GAD8	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Brix domain-containing protein.	0.768
H3G7H0_PHYRM	H3GAQ3_PHYRM	H3G7H0	H3GAQ3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.838
H3G7H0_PHYRM	H3GIT1_PHYRM	H3G7H0	H3GIT1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.781
H3G7H0_PHYRM	H3GV59_PHYRM	H3G7H0	H3GV59	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.798
H3G7H0_PHYRM	H3H0V1_PHYRM	H3G7H0	H3H0V1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-binding domain-containing protein.	0.792
H3G7H0_PHYRM	H3H0Y2_PHYRM	H3G7H0	H3H0Y2	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.781
H3G7H0_PHYRM	H3H4A7_PHYRM	H3G7H0	H3H4A7	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.837
H3G7H0_PHYRM	H3H763_PHYRM	H3G7H0	H3H763	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.781
H3G7H0_PHYRM	H3H8Z1_PHYRM	H3G7H0	H3H8Z1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Anticodon_1 domain-containing protein.	0.781
H3G7T4_PHYRM	H3G7H0_PHYRM	H3G7T4	H3G7H0	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.858
H3G7T4_PHYRM	H3GAQ3_PHYRM	H3G7T4	H3GAQ3	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.858
H3G7T4_PHYRM	H3GIT1_PHYRM	H3G7T4	H3GIT1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	AA_TRNA_LIGASE_II domain-containing protein.	0.730
H3G7T4_PHYRM	H3GV59_PHYRM	H3G7T4	H3GV59	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.908
H3G7T4_PHYRM	H3H0V1_PHYRM	H3G7T4	H3H0V1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-binding domain-containing protein.	0.986
H3G7T4_PHYRM	H3H0Y2_PHYRM	H3G7T4	H3H0Y2	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.974
H3G7T4_PHYRM	H3H4A7_PHYRM	H3G7T4	H3H4A7	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.768
H3G7T4_PHYRM	H3H763_PHYRM	H3G7T4	H3H763	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA-synt_1 domain-containing protein.	0.974
H3G7T4_PHYRM	H3H8Z1_PHYRM	H3G7T4	H3H8Z1	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Anticodon_1 domain-containing protein.	0.974
H3GAD8_PHYRM	H3G7H0_PHYRM	H3GAD8	H3G7H0	Brix domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.768

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Network Stats

number of nodes:

11

number of edges:

21

average node degree:

3.82

avg. local clustering coefficient:

0.865

expected number of edges:

11

PPI enrichment p-value:

0.00479

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006325

Chromatin organization

7 of 181

1.11

0.97

0.00072

GO:0016571

Histone methylation

3 of 17

1.77

0.76

0.0339

GO:0031497

Chromatin assembly

4 of 75

1.25

0.6

0.0450

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0035097

Histone methyltransferase complex

3 of 13

1.88

1.04

0.0094

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1126

Histone methylation, and Structural constituent of chromatin

9 of 28

2.03

5.49

7.82e-15

CL:1122

Mixed, incl. Histone methylation, and Structural constituent of chromatin

10 of 46

1.86

4.89

2.47e-15

CL:1128

Histone lysine methylation, and Structural constituent of chromatin

6 of 21

1.98

3.66

3.28e-09

CL:1129

Structural constituent of chromatin, and AWS domain

4 of 15

1.95

2.32

1.22e-05

CL:1172

Regulation of PTEN gene transcription, and JmjN domain

3 of 5

2.3

2.16

7.43e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04130

SNARE interactions in vesicular transport

3 of 24

1.62

1.02

0.0072

map04145

Phagosome

3 of 39

1.41

0.84

0.0138

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-3214841

PKMTs methylate histone lysines

3 of 11

1.95

1.16

0.0057

MAP-4839726

Chromatin organization

4 of 58

1.36

0.88

0.0089

MAP-3247509

Chromatin modifying enzymes

4 of 58

1.36

0.88

0.0089

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000786

Nucleosome

3 of 11

1.95

1.14

0.0062

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