STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G890_PHYRMCN hydrolase domain-containing protein. (289 aa)    
Predicted Functional Partners:
H3GA31_PHYRM
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.928
H3GFR4_PHYRM
ELFV_dehydrog domain-containing protein.
   
 
 0.928
H3GNJ5_PHYRM
ELFV_dehydrog domain-containing protein.
   
 
 0.928
H3G7M5_PHYRM
HIT domain-containing protein.
 
   
 0.920
H3G9S1_PHYRM
Aspartate aminotransferase.
     
 0.910
H3G9V6_PHYRM
Uncharacterized protein; Belongs to the LDH/MDH superfamily.
   
 0.907
H3GAF9_PHYRM
Malate dehydrogenase.
   
 0.907
H3GAD1_PHYRM
Uncharacterized protein.
    
 0.903
H3GA27_PHYRM
Uncharacterized protein.
  
  0.902
H3G968_PHYRM
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
     
 0.901
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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