STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G8E5_PHYRMTransketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (695 aa)    
Predicted Functional Partners:
H3G883_PHYRM
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.974
H3G8D0_PHYRM
Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
 0.959
H3G7N8_PHYRM
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.940
H3HC28_PHYRM
FBPase domain-containing protein; Belongs to the FBPase class 1 family.
  
 
 0.937
H3G8F9_PHYRM
Triosephosphate isomerase.
  
 0.934
H3G9S8_PHYRM
Uncharacterized protein.
  
 
 0.934
H3GAG9_PHYRM
Uncharacterized protein.
   
 0.932
H3GC78_PHYRM
Uncharacterized protein.
   
 0.932
H3GAS4_PHYRM
Uncharacterized protein.
   
 0.930
H3HD79_PHYRM
Uncharacterized protein.
  
 
 0.930
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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