STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G8S1_PHYRM60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (206 aa)    
Predicted Functional Partners:
H3G5G6_PHYRM
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.999
H3G7U4_PHYRM
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 0.999
H3G8D4_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
 0.999
H3G8X7_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 0.999
H3G9A1_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 0.999
H3GAM0_PHYRM
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.999
H3GDP2_PHYRM
Ribosomal_L14e domain-containing protein.
   
 0.999
H3GL87_PHYRM
Uncharacterized protein.
   
 0.999
H3GNV2_PHYRM
Uncharacterized protein.
   
 0.999
H3GQX2_PHYRM
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 0.999
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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