STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G956_PHYRMEF1_GNE domain-containing protein. (226 aa)    
Predicted Functional Partners:
H3H8A2_PHYRM
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.960
H3G8L8_PHYRM
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.950
H3G8M4_PHYRM
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 0.950
H3GG72_PHYRM
Uncharacterized protein.
   
 0.950
H3GH26_PHYRM
TCTP domain-containing protein; Belongs to the TCTP family.
  
 
 0.935
H3G852_PHYRM
B5 domain-containing protein.
 
 
    0.925
H3G946_PHYRM
Uncharacterized protein.
  
 
 0.887
H3G9T2_PHYRM
KH type-2 domain-containing protein.
  
   0.871
H3G898_PHYRM
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 
 0.866
H3G993_PHYRM
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 
 0.865
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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