STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G978_PHYRMCTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (580 aa)    
Predicted Functional Partners:
H3HCD6_PHYRM
Uncharacterized protein.
   
 
 0.952
H3GA45_PHYRM
Uncharacterized protein.
  
 0.947
H3G8D4_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.946
H3GQX2_PHYRM
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.944
H3G9A1_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 0.937
H3G8C7_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.932
H3G8V0_PHYRM
Nucleoside diphosphate kinase.
  
 
 0.929
H3HCR6_PHYRM
Nucleoside diphosphate kinase.
  
 
 0.929
H3G973_PHYRM
Ribosomal_L2_C domain-containing protein.
   
 
 0.918
H3G993_PHYRM
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 
 0.911
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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