STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G9Q7_PHYRMCarn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (633 aa)    
Predicted Functional Partners:
H3G8S6_PHYRM
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
  
0.942
H3HDE6_PHYRM
Carn_acyltransf domain-containing protein.
  
  
 
0.913
H3GFX8_PHYRM
TPR_REGION domain-containing protein.
    
 0.815
H3GLW0_PHYRM
Uncharacterized protein.
   
 0.750
H3GFV9_PHYRM
Pex14_N domain-containing protein.
    
 0.718
H3G7G8_PHYRM
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.712
H3G843_PHYRM
Uncharacterized protein.
   
 0.712
H3GZW8_PHYRM
SCP2 domain-containing protein.
   
 0.712
H3HC55_PHYRM
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.712
H3HCW2_PHYRM
Uncharacterized protein.
   
 0.712
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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