STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3G9S1_PHYRMAspartate aminotransferase. (427 aa)    
Predicted Functional Partners:
H3GAF9_PHYRM
Malate dehydrogenase.
   
 0.987
H3G9V6_PHYRM
Uncharacterized protein; Belongs to the LDH/MDH superfamily.
   
 0.962
H3G9K7_PHYRM
Uncharacterized protein.
   
 0.961
H3G951_PHYRM
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.960
H3G9R5_PHYRM
Uncharacterized protein.
  
 
 0.960
H3GA31_PHYRM
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.952
H3GFR4_PHYRM
ELFV_dehydrog domain-containing protein.
   
 0.952
H3GIQ9_PHYRM
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
 0.952
H3GNJ5_PHYRM
ELFV_dehydrog domain-containing protein.
   
 0.952
H3G9I7_PHYRM
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 0.950
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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