H3G9W9_PHYRM protein (Phytophthora ramorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3G9W9_PHYRM

Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (382 aa)

Predicted Functional Partners:

H3HD98_PHYRM

0.995

H3GZT3_PHYRM

0.984

H3GI14_PHYRM

0.835

H3G8D4_PHYRM

0.785

H3GBU3_PHYRM

0.770

H3GAG7_PHYRM

0.760

H3GM67_PHYRM

0.754

H3GGB0_PHYRM

0.679

H3G890_PHYRM

0.598

H3HBB8_PHYRM

0.598

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G890_PHYRM	H3G9W9_PHYRM	H3G890	H3G9W9	CN hydrolase domain-containing protein.	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	0.598
H3G890_PHYRM	H3GAG7_PHYRM	H3G890	H3GAG7	CN hydrolase domain-containing protein.	ArabFuran-catal domain-containing protein.	0.546
H3G890_PHYRM	H3GGB0_PHYRM	H3G890	H3GGB0	CN hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein.	0.605
H3G890_PHYRM	H3HD98_PHYRM	H3G890	H3HD98	CN hydrolase domain-containing protein.	BPL/LPL catalytic domain-containing protein.	0.546
H3G8D4_PHYRM	H3G9W9_PHYRM	H3G8D4	H3G9W9	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	0.785
H3G9W9_PHYRM	H3G890_PHYRM	H3G9W9	H3G890	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	CN hydrolase domain-containing protein.	0.598
H3G9W9_PHYRM	H3G8D4_PHYRM	H3G9W9	H3G8D4	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.785
H3G9W9_PHYRM	H3GAG7_PHYRM	H3G9W9	H3GAG7	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	ArabFuran-catal domain-containing protein.	0.760
H3G9W9_PHYRM	H3GBU3_PHYRM	H3G9W9	H3GBU3	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Lactamase_B domain-containing protein.	0.770
H3G9W9_PHYRM	H3GGB0_PHYRM	H3G9W9	H3GGB0	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Nudix hydrolase domain-containing protein.	0.679
H3G9W9_PHYRM	H3GI14_PHYRM	H3G9W9	H3GI14	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	BPL/LPL catalytic domain-containing protein.	0.835
H3G9W9_PHYRM	H3GM67_PHYRM	H3G9W9	H3GM67	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	CN hydrolase domain-containing protein.	0.754
H3G9W9_PHYRM	H3GZT3_PHYRM	H3G9W9	H3GZT3	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.984
H3G9W9_PHYRM	H3HBB8_PHYRM	H3G9W9	H3HBB8	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	CN hydrolase domain-containing protein.	0.598
H3G9W9_PHYRM	H3HD98_PHYRM	H3G9W9	H3HD98	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	BPL/LPL catalytic domain-containing protein.	0.995
H3GAG7_PHYRM	H3G890_PHYRM	H3GAG7	H3G890	ArabFuran-catal domain-containing protein.	CN hydrolase domain-containing protein.	0.546
H3GAG7_PHYRM	H3G9W9_PHYRM	H3GAG7	H3G9W9	ArabFuran-catal domain-containing protein.	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.	0.760
H3GAG7_PHYRM	H3GGB0_PHYRM	H3GAG7	H3GGB0	ArabFuran-catal domain-containing protein.	Nudix hydrolase domain-containing protein.	0.519
H3GAG7_PHYRM	H3GI14_PHYRM	H3GAG7	H3GI14	ArabFuran-catal domain-containing protein.	BPL/LPL catalytic domain-containing protein.	0.768
H3GAG7_PHYRM	H3GM67_PHYRM	H3GAG7	H3GM67	ArabFuran-catal domain-containing protein.	CN hydrolase domain-containing protein.	0.666

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About