STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GA76_PHYRMAA_TRNA_LIGASE_II domain-containing protein. (503 aa)    
Predicted Functional Partners:
H3G852_PHYRM
B5 domain-containing protein.
  
 0.999
H3G565_PHYRM
Uncharacterized protein.
   
 
0.912
H3H0V1_PHYRM
tRNA-binding domain-containing protein.
  
 
 0.788
H3GBC9_PHYRM
Uncharacterized protein.
   
   0.754
H3GH50_PHYRM
Uncharacterized protein.
   
    0.713
H3H8A2_PHYRM
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.700
H3GAN3_PHYRM
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
   
  
 0.698
H3G8W8_PHYRM
AA_TRNA_LIGASE_II domain-containing protein.
   
 
 0.695
H3GI71_PHYRM
AA_TRNA_LIGASE_II domain-containing protein.
   
 
 0.695
H3G8R2_PHYRM
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.681
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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