STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GA80_PHYRMCorrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (200 aa)    
Predicted Functional Partners:
H3G7N5_PHYRM
SET domain-containing protein.
 
      0.765
H3H305_PHYRM
Nitroreductase domain-containing protein.
    
 0.707
H3G5B2_PHYRM
Aminotran_1_2 domain-containing protein.
    
 0.662
H3GI85_PHYRM
Aminotran_1_2 domain-containing protein.
    
 0.662
H3GL10_PHYRM
Fe-ADH domain-containing protein.
  
 
 0.572
H3GBM2_PHYRM
Lactamase_B domain-containing protein.
    
  0.516
H3GR05_PHYRM
Uncharacterized protein.
    
  0.516
H3GFL4_PHYRM
Mevalonate kinase.
   
  
 0.488
H3G7F4_PHYRM
Flavoprotein domain-containing protein.
     
 0.423
H3GT07_PHYRM
HEM4 domain-containing protein.
     
 0.421
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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