STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GAA6_PHYRMRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (148 aa)    
Predicted Functional Partners:
H3G7J4_PHYRM
Uncharacterized protein.
   
 0.999
H3G8N7_PHYRM
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.998
H3GV22_PHYRM
Uncharacterized protein.
   
 0.998
H3G970_PHYRM
PUA domain-containing protein.
  
 0.997
H3G947_PHYRM
Uncharacterized protein.
   
 0.995
H3G7Y4_PHYRM
TruB_N domain-containing protein.
  
 0.994
H3GBM4_PHYRM
Uncharacterized protein.
   
 
 0.994
H3G5Z0_PHYRM
Nop domain-containing protein.
   
 0.992
H3G5X2_PHYRM
Nop domain-containing protein.
   
 0.988
H3G8P9_PHYRM
Nop domain-containing protein.
   
 0.988
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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