STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GAW1_PHYRMWD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (309 aa)    
Predicted Functional Partners:
H3G930_PHYRM
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.996
H3GG43_PHYRM
Uncharacterized protein.
   
 0.996
H3GQY9_PHYRM
Uncharacterized protein.
    
 0.996
H3GVL6_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.996
H3GK49_PHYRM
Uncharacterized protein.
    
 0.995
H3GZ38_PHYRM
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
  
 
0.989
H3H5G1_PHYRM
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.989
H3HAU0_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
 0.988
H3GDK1_PHYRM
Uncharacterized protein.
    
 0.977
H3GH46_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.977
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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