H3GDW5_PHYRM protein (Phytophthora ramorum) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

H3GDW5_PHYRM

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (206 aa)

Predicted Functional Partners:

H3H784_PHYRM

0.940

H3G8J2_PHYRM

0.929

H3G6J0_PHYRM

0.925

H3GFA8_PHYRM

0.925

H3H027_PHYRM

0.924

H3H4G2_PHYRM

0.924

H3GS25_PHYRM

0.922

H3G6N3_PHYRM

0.921

H3G940_PHYRM

0.920

H3GQX2_PHYRM

0.920

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G6J0_PHYRM	H3G6N3_PHYRM	H3G6J0	H3G6N3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.997
H3G6J0_PHYRM	H3G8J2_PHYRM	H3G6J0	H3G8J2	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
H3G6J0_PHYRM	H3G940_PHYRM	H3G6J0	H3G940	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.997
H3G6J0_PHYRM	H3GDW5_PHYRM	H3G6J0	H3GDW5	Uncharacterized protein.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.925
H3G6J0_PHYRM	H3GFA8_PHYRM	H3G6J0	H3GFA8	Uncharacterized protein.	Uncharacterized protein.	0.997
H3G6J0_PHYRM	H3GQX2_PHYRM	H3G6J0	H3GQX2	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.997
H3G6J0_PHYRM	H3GS25_PHYRM	H3G6J0	H3GS25	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.997
H3G6J0_PHYRM	H3H027_PHYRM	H3G6J0	H3H027	Uncharacterized protein.	Uncharacterized protein.	0.997
H3G6J0_PHYRM	H3H4G2_PHYRM	H3G6J0	H3H4G2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
H3G6J0_PHYRM	H3H784_PHYRM	H3G6J0	H3H784	Uncharacterized protein.	Uncharacterized protein.	0.997
H3G6N3_PHYRM	H3G6J0_PHYRM	H3G6N3	H3G6J0	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.997
H3G6N3_PHYRM	H3G8J2_PHYRM	H3G6N3	H3G8J2	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
H3G6N3_PHYRM	H3G940_PHYRM	H3G6N3	H3G940	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
H3G6N3_PHYRM	H3GDW5_PHYRM	H3G6N3	H3GDW5	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.921
H3G6N3_PHYRM	H3GFA8_PHYRM	H3G6N3	H3GFA8	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.997
H3G6N3_PHYRM	H3GQX2_PHYRM	H3G6N3	H3GQX2	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.997
H3G6N3_PHYRM	H3GS25_PHYRM	H3G6N3	H3GS25	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	RIBOSOMAL_L9 domain-containing protein.	0.997
H3G6N3_PHYRM	H3H027_PHYRM	H3G6N3	H3H027	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.997
H3G6N3_PHYRM	H3H4G2_PHYRM	H3G6N3	H3H4G2	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.997
H3G6N3_PHYRM	H3H784_PHYRM	H3G6N3	H3H784	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	Uncharacterized protein.	0.997

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Network Stats

number of nodes:

11

number of edges:

21

average node degree:

3.82

avg. local clustering coefficient:

0.865

expected number of edges:

11

PPI enrichment p-value:

0.00479

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006325

Chromatin organization

7 of 181

1.11

0.97

0.00072

GO:0016571

Histone methylation

3 of 17

1.77

0.76

0.0339

GO:0031497

Chromatin assembly

4 of 75

1.25

0.6

0.0450

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0035097

Histone methyltransferase complex

3 of 13

1.88

1.04

0.0094

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1126

Histone methylation, and Structural constituent of chromatin

9 of 28

2.03

5.49

7.82e-15

CL:1122

Mixed, incl. Histone methylation, and Structural constituent of chromatin

10 of 46

1.86

4.89

2.47e-15

CL:1128

Histone lysine methylation, and Structural constituent of chromatin

6 of 21

1.98

3.66

3.28e-09

CL:1129

Structural constituent of chromatin, and AWS domain

4 of 15

1.95

2.32

1.22e-05

CL:1172

Regulation of PTEN gene transcription, and JmjN domain

3 of 5

2.3

2.16

7.43e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04130

SNARE interactions in vesicular transport

3 of 24

1.62

1.02

0.0072

map04145

Phagosome

3 of 39

1.41

0.84

0.0138

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-3214841

PKMTs methylate histone lysines

3 of 11

1.95

1.16

0.0057

MAP-4839726

Chromatin organization

4 of 58

1.36

0.88

0.0089

MAP-3247509

Chromatin modifying enzymes

4 of 58

1.36

0.88

0.0089

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000786

Nucleosome

3 of 11

1.95

1.14

0.0062

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