STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GEH1_PHYRMUncharacterized protein. (1079 aa)    
Predicted Functional Partners:
H3GY61_PHYRM
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
 0.999
H3GCM4_PHYRM
Uncharacterized protein.
   
 0.993
H3GEI9_PHYRM
Guanylate cyclase domain-containing protein.
   
 0.993
H3GKS2_PHYRM
Spt4 domain-containing protein.
    
 0.990
H3GJ50_PHYRM
Uncharacterized protein.
    
 0.987
H3GJ62_PHYRM
Uncharacterized protein.
   
 0.987
H3GJ63_PHYRM
Uncharacterized protein.
   
 0.987
H3GZK0_PHYRM
Uncharacterized protein.
   
 0.987
H3GMV0_PHYRM
RPOLD domain-containing protein.
   
 0.980
H3GHD4_PHYRM
RPOL4c domain-containing protein.
    
 0.976
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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