STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GFD9_PHYRMUncharacterized protein. (465 aa)    
Predicted Functional Partners:
H3GIT0_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
    0.781
H3GAD8_PHYRM
Brix domain-containing protein.
   
    0.770
H3HCZ8_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
    0.756
H3GJC5_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
  
 0.748
H3HCF7_PHYRM
Protein MAK16 homolog; Belongs to the MAK16 family.
   
    0.745
H3G854_PHYRM
Uncharacterized protein.
   
    0.732
H3GHE4_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
    0.717
H3G884_PHYRM
Brix domain-containing protein.
   
    0.710
H3GHG9_PHYRM
UPF0020 domain-containing protein.
   
    0.708
H3GA64_PHYRM
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
    0.706
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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