STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GGH8_PHYRMFCP1 homology domain-containing protein. (429 aa)    
Predicted Functional Partners:
H3HAD5_PHYRM
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.902
H3GIG7_PHYRM
Uncharacterized protein.
    
 0.837
H3G8U8_PHYRM
Uncharacterized protein.
    
 0.814
H3GI13_PHYRM
Uncharacterized protein.
    
 0.803
H3GJ00_PHYRM
LNS2 domain-containing protein.
    
 0.800
H3GZK8_PHYRM
LNS2 domain-containing protein.
    
 0.800
H3GT06_PHYRM
Uncharacterized protein.
    
 0.773
H3GHD4_PHYRM
RPOL4c domain-containing protein.
    
 0.763
H3GMV0_PHYRM
RPOLD domain-containing protein.
    
 0.754
H3GV90_PHYRM
RPOLD domain-containing protein.
    
 0.754
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.