STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GHS4_PHYRMATP_transf domain-containing protein. (306 aa)    
Predicted Functional Partners:
H3GR72_PHYRM
Uncharacterized protein.
     
 0.900
H3G7M5_PHYRM
HIT domain-containing protein.
     
 0.859
H3G914_PHYRM
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.855
H3H0M0_PHYRM
Uncharacterized protein.
    
 0.855
H3HDB4_PHYRM
FHA domain-containing protein.
    
 0.813
H3GBC6_PHYRM
Uncharacterized protein; Belongs to the TrpA family.
    
 0.781
H3G8V9_PHYRM
PALP domain-containing protein.
    
 0.768
H3G5W3_PHYRM
Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.
    
 0.701
H3HBE8_PHYRM
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.697
H3GTD3_PHYRM
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.679
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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