STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GI81_PHYRMUncharacterized protein. (150 aa)    
Predicted Functional Partners:
H3G535_PHYRM
Sm domain-containing protein.
    
  0.632
H3G549_PHYRM
Small nuclear ribonucleoprotein G.
    
  0.627
H3HDQ7_PHYRM
RRM domain-containing protein.
    
 0.613
H3G668_PHYRM
RRM domain-containing protein.
   
 0.582
H3G6M7_PHYRM
Nuclear cap-binding protein subunit 2.
   
  0.580
H3GED7_PHYRM
Uncharacterized protein.
    
 0.576
H3HAV5_PHYRM
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.576
H3HBA5_PHYRM
Uncharacterized protein.
    
 0.576
H3GU44_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.572
H3HB99_PHYRM
RanBP2-type domain-containing protein.
    
 0.567
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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