STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GIT0_PHYRMWD_REPEATS_REGION domain-containing protein. (351 aa)    
Predicted Functional Partners:
H3G8D5_PHYRM
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
 0.996
H3HD50_PHYRM
Uncharacterized protein.
   
 0.996
H3G7A1_PHYRM
tRNA (adenine(58)-N(1))-methyltransferase.
   
 
 0.878
H3GMB8_PHYRM
PseudoU_synth_1 domain-containing protein.
   
 
 0.839
H3GSS2_PHYRM
PseudoU_synth_1 domain-containing protein.
   
 
 0.839
H3GC19_PHYRM
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
  
 0.811
H3G5V8_PHYRM
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
    0.785
H3GKX8_PHYRM
Uncharacterized protein.
   
 0.782
H3GKY1_PHYRM
Uncharacterized protein.
   
 0.782
H3GFD9_PHYRM
Uncharacterized protein.
   
    0.781
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.