STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GIU4_PHYRMAlpha-carbonic anhydrase domain-containing protein. (422 aa)    
Predicted Functional Partners:
H3GAD8_PHYRM
Brix domain-containing protein.
   
 
 0.735
H3G8C3_PHYRM
Ribosomal_L18_c domain-containing protein.
    
 
 0.691
H3G8C7_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.617
H3HDQ1_PHYRM
Brix domain-containing protein.
   
    0.597
H3HCZ8_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
  
 0.595
H3GJ86_PHYRM
PUM-HD domain-containing protein.
   
    0.563
H3GK58_PHYRM
Uncharacterized protein.
   
    0.541
H3G913_PHYRM
Peptidase_M24 domain-containing protein.
   
  
 0.536
H3GNQ3_PHYRM
Bms1-type G domain-containing protein.
   
  
 0.529
H3GRQ7_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
    0.527
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.