STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GJ18_PHYRMPept_C1 domain-containing protein; Belongs to the peptidase C1 family. (503 aa)    
Predicted Functional Partners:
H3G6K2_PHYRM
Uncharacterized protein; Belongs to the peptidase C1 family.
  
  
 
0.871
H3GJ17_PHYRM
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
  
  
 
0.842
H3GMW6_PHYRM
Uncharacterized protein; Belongs to the peptidase C1 family.
  
0.744
H3GTT7_PHYRM
Uncharacterized protein.
   
 
 0.582
H3G5X0_PHYRM
Uncharacterized protein.
   
 0.537
H3G7S0_PHYRM
Uncharacterized protein.
   
 0.537
H3H240_PHYRM
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.534
H3GHP2_PHYRM
Uncharacterized protein.
   
 
 0.499
H3GJS8_PHYRM
Sushi domain-containing protein.
    
 0.499
H3G930_PHYRM
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
     
 0.473
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.