STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GKV0_PHYRMArabinogalactan endo-beta-1,4-galactanase. (235 aa)    
Predicted Functional Partners:
H3GKU9_PHYRM
Arabinogalactan endo-beta-1,4-galactanase.
 
     0.904
H3GLB8_PHYRM
CMP/dCMP-type deaminase domain-containing protein.
    
 0.836
H3GWN7_PHYRM
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.729
H3GE58_PHYRM
Thymidine kinase.
    
 0.599
H3GY73_PHYRM
IU_nuc_hydro domain-containing protein.
    
 0.578
H3G9R6_PHYRM
Thymidylate_kin domain-containing protein.
    
 0.571
H3GTK1_PHYRM
Uncharacterized protein.
    
 0.558
H3GXK1_PHYRM
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.550
H3G6J1_PHYRM
ADH_N domain-containing protein.
  
 
  0.534
H3GAC1_PHYRM
S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
  0.534
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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