STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GMW4_PHYRMVWFA domain-containing protein. (881 aa)    
Predicted Functional Partners:
H3GM72_PHYRM
Beta-Casp domain-containing protein.
    
 0.876
H3HD39_PHYRM
Uncharacterized protein.
    
 0.876
H3H4N3_PHYRM
DUF3677 domain-containing protein.
    
 0.855
H3H7V3_PHYRM
Uncharacterized protein.
    
 0.855
H3GGI9_PHYRM
TPR_REGION domain-containing protein.
    
 0.850
H3HE48_PHYRM
EF-hand domain-containing protein.
    
 0.815
H3GS71_PHYRM
Uncharacterized protein.
    
 0.752
H3GJ78_PHYRM
Beta-Casp domain-containing protein.
    
 0.742
H3HBL2_PHYRM
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.693
H3HDK0_PHYRM
Uncharacterized protein.
    
  0.693
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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