STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GRX3_PHYRMUncharacterized protein. (618 aa)    
Predicted Functional Partners:
H3HBD5_PHYRM
COMM domain-containing protein.
    
 0.978
H3H177_PHYRM
KOG2701 domain-containing protein.
    
 
 0.943
H3GSV9_PHYRM
COMM domain-containing protein.
    
 0.927
H3GGU9_PHYRM
Uncharacterized protein.
  
 
 
 0.875
H3HB69_PHYRM
Uncharacterized protein.
  
 
 0.872
H3GDK5_PHYRM
IFRD domain-containing protein.
    
 0.839
H3HAU8_PHYRM
IFRD domain-containing protein.
    
 0.839
H3GA82_PHYRM
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.806
H3GBK0_PHYRM
PCI domain-containing protein.
   
 
  0.673
H3GHW1_PHYRM
E2_bind domain-containing protein.
   
 
  0.663
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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