H3GRY9_PHYRM protein (Phytophthora ramorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3GRY9_PHYRM

Uncharacterized protein. (489 aa)

Predicted Functional Partners:

H3GSP8_PHYRM

0.828

H3H037_PHYRM

0.828

H3GQQ6_PHYRM

0.694

H3GQR1_PHYRM

0.694

H3H3F5_PHYRM

0.694

H3GEL4_PHYRM

0.642

H3GEL5_PHYRM

0.642

H3G5T1_PHYRM

0.557

H3G7P5_PHYRM

0.557

H3G7S3_PHYRM

0.557

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5T1_PHYRM	H3GEL4_PHYRM	H3G5T1	H3GEL4	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G5T1_PHYRM	H3GEL5_PHYRM	H3G5T1	H3GEL5	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G5T1_PHYRM	H3GRY9_PHYRM	H3G5T1	H3GRY9	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.557
H3G5T1_PHYRM	H3H037_PHYRM	H3G5T1	H3H037	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.857
H3G7P5_PHYRM	H3GEL4_PHYRM	H3G7P5	H3GEL4	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G7P5_PHYRM	H3GEL5_PHYRM	H3G7P5	H3GEL5	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G7P5_PHYRM	H3GRY9_PHYRM	H3G7P5	H3GRY9	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.557
H3G7P5_PHYRM	H3H037_PHYRM	H3G7P5	H3H037	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.857
H3G7S3_PHYRM	H3GEL4_PHYRM	H3G7S3	H3GEL4	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G7S3_PHYRM	H3GEL5_PHYRM	H3G7S3	H3GEL5	Uncharacterized protein; Belongs to the AAA ATPase family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.491
H3G7S3_PHYRM	H3GRY9_PHYRM	H3G7S3	H3GRY9	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.557
H3G7S3_PHYRM	H3H037_PHYRM	H3G7S3	H3H037	Uncharacterized protein; Belongs to the AAA ATPase family.	UBX domain-containing protein.	0.857
H3GEL4_PHYRM	H3G5T1_PHYRM	H3GEL4	H3G5T1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491
H3GEL4_PHYRM	H3G7P5_PHYRM	H3GEL4	H3G7P5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491
H3GEL4_PHYRM	H3G7S3_PHYRM	H3GEL4	H3G7S3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491
H3GEL4_PHYRM	H3GEL5_PHYRM	H3GEL4	H3GEL5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.886
H3GEL4_PHYRM	H3GRY9_PHYRM	H3GEL4	H3GRY9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.642
H3GEL5_PHYRM	H3G5T1_PHYRM	H3GEL5	H3G5T1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491
H3GEL5_PHYRM	H3G7P5_PHYRM	H3GEL5	H3G7P5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491
H3GEL5_PHYRM	H3G7S3_PHYRM	H3GEL5	H3G7S3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.491

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About