STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GTL7_PHYRMUncharacterized protein. (210 aa)    
Predicted Functional Partners:
H3GAM8_PHYRM
Uncharacterized protein.
 
 
 0.917
H3G9V7_PHYRM
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.699
H3H8F1_PHYRM
Uncharacterized protein.
     
 0.699
H3G777_PHYRM
Uncharacterized protein.
     
 0.612
H3GB83_PHYRM
Uncharacterized protein.
     
 0.612
H3H908_PHYRM
Uncharacterized protein.
     
 0.612
H3G9H1_PHYRM
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
     
 0.554
H3GDW5_PHYRM
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
     
 0.485
H3G504_PHYRM
FMN hydroxy acid dehydrogenase domain-containing protein.
     
 0.484
H3GAJ1_PHYRM
FMN hydroxy acid dehydrogenase domain-containing protein.
     
 0.484
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.