STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GU70_PHYRMReverse transcriptase domain-containing protein. (379 aa)    
Predicted Functional Partners:
H3G6N5_PHYRM
Uncharacterized protein.
    
  0.769
H3G663_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.495
H3G731_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.472
H3H9U1_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.472
H3GNY1_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.453
H3G617_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.438
H3H285_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.434
H3H916_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.412
H3H793_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.409
H3H831_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.407
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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