STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GXD4_PHYRMABC transporter domain-containing protein. (588 aa)    
Predicted Functional Partners:
H3G8J2_PHYRM
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.770
H3GAN3_PHYRM
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.761
H3GU44_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.753
H3H027_PHYRM
Uncharacterized protein.
   
 
 0.752
H3GQX2_PHYRM
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.748
H3H784_PHYRM
Uncharacterized protein.
   
   0.746
H3G8C7_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.743
H3G946_PHYRM
Uncharacterized protein.
   
 
 0.742
H3G6N3_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
    
 
 0.739
H3G9T2_PHYRM
KH type-2 domain-containing protein.
   
   0.739
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.