STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GZ66_PHYRMW2 domain-containing protein. (433 aa)    
Predicted Functional Partners:
H3G926_PHYRM
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.904
H3GAU6_PHYRM
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.903
H3GMP6_PHYRM
Uncharacterized protein.
   
 0.850
CES4
Cellulose synthase 4.
    
 0.817
H3GM50_PHYRM
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.817
H3GXG5_PHYRM
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.817
H3G6M7_PHYRM
Nuclear cap-binding protein subunit 2.
    
 0.786
H3GA62_PHYRM
S1 motif domain-containing protein.
   
 0.783
H3GV22_PHYRM
Uncharacterized protein.
   
  0.780
H3GS44_PHYRM
Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.
   
 0.754
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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