STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3GZH0_PHYRMCCHC-type domain-containing protein. (602 aa)    
Predicted Functional Partners:
H3G7N9_PHYRM
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.963
H3GDY4_PHYRM
Uncharacterized protein.
   
 
 0.954
H3GIY2_PHYRM
Uncharacterized protein.
   
 
 0.954
H3G7L1_PHYRM
Uncharacterized protein.
   
 
 0.952
H3GTC8_PHYRM
C2H2-type domain-containing protein.
   
 0.950
H3GC56_PHYRM
SURP motif domain-containing protein.
   
 0.942
H3GGH2_PHYRM
Uncharacterized protein.
   
 0.942
H3G6L1_PHYRM
Matrin-type domain-containing protein.
    
 0.936
H3G7S5_PHYRM
Matrin-type domain-containing protein.
    
 0.936
H3G976_PHYRM
SF3b1 domain-containing protein.
   
 0.870
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.