STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3H0H4_PHYRMUso1_p115_head domain-containing protein. (1091 aa)    
Predicted Functional Partners:
H3GFH3_PHYRM
t-SNARE coiled-coil homology domain-containing protein.
    
 0.969
H3G8V4_PHYRM
t-SNARE coiled-coil homology domain-containing protein.
    
 0.918
H3HE62_PHYRM
t-SNARE coiled-coil homology domain-containing protein.
    
 0.918
H3GSD7_PHYRM
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.898
H3HB15_PHYRM
GRASP55_65 domain-containing protein.
   
 0.873
H3GTJ1_PHYRM
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.871
H3GAY3_PHYRM
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.813
H3GVF5_PHYRM
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.812
H3G8X5_PHYRM
Ras-like proteinRas-related protein Ypt1.
   
 0.810
H3GC27_PHYRM
Uncharacterized protein.
   
 0.810
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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