STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3H0Z5_PHYRMUncharacterized protein. (1095 aa)    
Predicted Functional Partners:
H3GSD7_PHYRM
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.984
H3GNV8_PHYRM
TPR_REGION domain-containing protein.
    
 0.982
H3GTT4_PHYRM
Uncharacterized protein; Belongs to the syntaxin family.
    
 0.977
H3GUZ0_PHYRM
Uncharacterized protein.
   
 
 0.944
H3GVF5_PHYRM
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.922
H3GZ14_PHYRM
Uncharacterized protein.
   
 0.911
H3GZ17_PHYRM
TPR_REGION domain-containing protein.
   
 0.911
H3GAY3_PHYRM
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.910
H3G6X8_PHYRM
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.905
H3GFH3_PHYRM
t-SNARE coiled-coil homology domain-containing protein.
    
 0.873
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.