STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3H2P9_PHYRMUncharacterized protein. (231 aa)    
Predicted Functional Partners:
H3G6D5_PHYRM
Histone H2A; Belongs to the histone H2A family.
   
 0.888
H3G8X0_PHYRM
RuvB-like helicase; Belongs to the RuvB family.
    
 0.865
H3HDA4_PHYRM
BSD domain-containing protein.
    
 0.842
H3GBC5_PHYRM
Uncharacterized protein.
    
 0.836
H3GAU9_PHYRM
Uncharacterized protein.
    
 0.826
H3GP02_PHYRM
Uncharacterized protein.
    
 0.821
H3HE68_PHYRM
RPOL_N domain-containing protein.
    
 0.821
H3GUR6_PHYRM
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.805
H3G601_PHYRM
General transcription factor IIH subunit.
    
 0.804
H3GP27_PHYRM
Uncharacterized protein; Belongs to the actin family.
   
 0.789
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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