H3H4T8_PHYRM protein (Phytophthora ramorum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3H4T8_PHYRM

Uncharacterized protein. (325 aa)

Predicted Functional Partners:

H3H3X7_PHYRM

0.973

H3GJ66_PHYRM

0.941

H3H6Q5_PHYRM

0.941

H3GWG7_PHYRM

0.884

H3GPD0_PHYRM

0.843

H3GUX4_PHYRM

0.843

H3GVL1_PHYRM

0.843

H3GH12_PHYRM

0.809

H3GH13_PHYRM

0.809

H3GIG7_PHYRM

0.776

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3GH12_PHYRM	H3GJ66_PHYRM	H3GH12	H3GJ66	Uncharacterized protein.	Uncharacterized protein.	0.652
H3GH12_PHYRM	H3GPD0_PHYRM	H3GH12	H3GPD0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.713
H3GH12_PHYRM	H3GUX4_PHYRM	H3GH12	H3GUX4	Uncharacterized protein.	Uncharacterized protein.	0.713
H3GH12_PHYRM	H3GVL1_PHYRM	H3GH12	H3GVL1	Uncharacterized protein.	Uncharacterized protein.	0.713
H3GH12_PHYRM	H3H3X7_PHYRM	H3GH12	H3H3X7	Uncharacterized protein.	Uncharacterized protein.	0.503
H3GH12_PHYRM	H3H4T8_PHYRM	H3GH12	H3H4T8	Uncharacterized protein.	Uncharacterized protein.	0.809
H3GH12_PHYRM	H3H6Q5_PHYRM	H3GH12	H3H6Q5	Uncharacterized protein.	POTRA domain-containing protein.	0.652
H3GH13_PHYRM	H3GJ66_PHYRM	H3GH13	H3GJ66	Uncharacterized protein.	Uncharacterized protein.	0.652
H3GH13_PHYRM	H3GPD0_PHYRM	H3GH13	H3GPD0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.713
H3GH13_PHYRM	H3GUX4_PHYRM	H3GH13	H3GUX4	Uncharacterized protein.	Uncharacterized protein.	0.713
H3GH13_PHYRM	H3GVL1_PHYRM	H3GH13	H3GVL1	Uncharacterized protein.	Uncharacterized protein.	0.713
H3GH13_PHYRM	H3H3X7_PHYRM	H3GH13	H3H3X7	Uncharacterized protein.	Uncharacterized protein.	0.503
H3GH13_PHYRM	H3H4T8_PHYRM	H3GH13	H3H4T8	Uncharacterized protein.	Uncharacterized protein.	0.809
H3GH13_PHYRM	H3H6Q5_PHYRM	H3GH13	H3H6Q5	Uncharacterized protein.	POTRA domain-containing protein.	0.652
H3GIG7_PHYRM	H3GPD0_PHYRM	H3GIG7	H3GPD0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.494
H3GIG7_PHYRM	H3GUX4_PHYRM	H3GIG7	H3GUX4	Uncharacterized protein.	Uncharacterized protein.	0.494
H3GIG7_PHYRM	H3GVL1_PHYRM	H3GIG7	H3GVL1	Uncharacterized protein.	Uncharacterized protein.	0.494
H3GIG7_PHYRM	H3GWG7_PHYRM	H3GIG7	H3GWG7	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.991
H3GIG7_PHYRM	H3H4T8_PHYRM	H3GIG7	H3H4T8	Uncharacterized protein.	Uncharacterized protein.	0.776
H3GJ66_PHYRM	H3GH12_PHYRM	H3GJ66	H3GH12	Uncharacterized protein.	Uncharacterized protein.	0.652

page 1 of 4

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About