STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3H5B7_PHYRMUncharacterized protein. (230 aa)    
Predicted Functional Partners:
H3GEE2_PHYRM
RanBP2-type domain-containing protein.
 
 
 0.900
H3GBE8_PHYRM
Nuclear pore protein.
   
 0.882
H3GLV6_PHYRM
Uncharacterized protein.
   
 0.876
H3H0T8_PHYRM
Nucleoporin_N domain-containing protein.
   
 0.876
H3H5G1_PHYRM
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.875
H3GWZ9_PHYRM
Nsp1_C domain-containing protein.
   
 0.874
H3GQY9_PHYRM
Uncharacterized protein.
   
 0.872
H3GGU8_PHYRM
Nup54 domain-containing protein.
   
 0.871
H3G7H3_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.870
H3GJM7_PHYRM
RanBP2-type domain-containing protein.
   
 0.869
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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