STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3H8C1_PHYRMUncharacterized protein. (487 aa)    
Predicted Functional Partners:
H3G6N5_PHYRM
Uncharacterized protein.
    
  0.769
H3H6D8_PHYRM
RT_RNaseH_2 domain-containing protein.
  
     0.516
H3H499_PHYRM
RT_RNaseH_2 domain-containing protein.
  
     0.514
H3GPF8_PHYRM
Uncharacterized protein.
  
     0.512
H3H9E9_PHYRM
RT_RNaseH_2 domain-containing protein.
  
     0.511
H3GWK4_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.509
H3H9B3_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.507
H3H7Z8_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.505
H3H8P4_PHYRM
Reverse transcriptase domain-containing protein.
  
     0.501
H3H4Z1_PHYRM
Uncharacterized protein.
  
     0.485
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.