STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HA25_PHYRMFlavodoxin-like domain-containing protein. (321 aa)    
Predicted Functional Partners:
H3HBF8_PHYRM
SAM_MT_TRM5_TYW2 domain-containing protein.
   
 
 0.631
H3G4X8_PHYRM
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.611
H3H756_PHYRM
Uncharacterized protein.
 
      0.579
H3G546_PHYRM
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
     
 0.501
H3G884_PHYRM
Brix domain-containing protein.
   
   0.469
H3GJC5_PHYRM
WD_REPEATS_REGION domain-containing protein.
   
 
 0.468
H3GU36_PHYRM
Uncharacterized protein.
   
    0.429
H3G5H5_PHYRM
Uncharacterized protein.
   
    0.426
H3G5H6_PHYRM
Uncharacterized protein.
   
    0.426
H3GDV6_PHYRM
Protein-L-isoaspartate O-methyltransferase.
   
    0.426
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.