STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HAD5_PHYRMTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (424 aa)    
Predicted Functional Partners:
H3GT06_PHYRM
Uncharacterized protein.
   
 0.999
H3GXI3_PHYRM
Uncharacterized protein.
   
 0.993
H3GI13_PHYRM
Uncharacterized protein.
   
 0.992
H3GMV0_PHYRM
RPOLD domain-containing protein.
    
 0.991
H3GEG6_PHYRM
HTH TFE/IIEalpha-type domain-containing protein.
    
 0.990
H3HDK0_PHYRM
Uncharacterized protein.
   
 0.989
H3GFD0_PHYRM
TFA2_Winged_2 domain-containing protein.
   
 0.982
H3GHD4_PHYRM
RPOL4c domain-containing protein.
    
 0.980
H3GUR6_PHYRM
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.979
H3G601_PHYRM
General transcription factor IIH subunit.
    
 0.977
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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