STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HCJ7_PHYRMUncharacterized protein. (450 aa)    
Predicted Functional Partners:
H3G6N5_PHYRM
Uncharacterized protein.
    
 
 0.991
H3G9U4_PHYRM
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 
 0.949
H3HE46_PHYRM
RECA_2 domain-containing protein.
  
 
 0.935
H3GID5_PHYRM
Ubiquitin-like domain-containing protein.
    
 
 0.934
H3G560_PHYRM
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.904
H3GQI3_PHYRM
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.904
H3GV41_PHYRM
Uncharacterized protein.
  
 0.904
H3H5C6_PHYRM
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.904
H3HDP3_PHYRM
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.904
H3G4Y9_PHYRM
Uncharacterized protein.
   
 
 0.902
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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