STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HCU3_PHYRMHelicase C-terminal domain-containing protein. (586 aa)    
Predicted Functional Partners:
H3GZX6_PHYRM
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.970
H3GUH2_PHYRM
CPSF_A domain-containing protein.
   
 0.967
H3GFY5_PHYRM
TPR_REGION domain-containing protein.
    
 
 0.929
H3GML8_PHYRM
Fip1 domain-containing protein.
    
 0.928
H3G8V8_PHYRM
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.899
H3GUX3_PHYRM
FHA domain-containing protein.
    
 0.895
H3G933_PHYRM
Uncharacterized protein.
  
0.890
H3GV05_PHYRM
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
   
 0.879
H3HDR1_PHYRM
PKS_AT domain-containing protein.
   
 0.869
H3GWX4_PHYRM
Uncharacterized protein.
    
 0.857
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.