STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HD16_PHYRMCS domain-containing protein. (202 aa)    
Predicted Functional Partners:
H3H2U3_PHYRM
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.
    
 0.736
H3H7W0_PHYRM
WD_REPEATS_REGION domain-containing protein.
    
 0.736
H3GSC7_PHYRM
Uncharacterized protein.
     
 0.701
H3HDX0_PHYRM
BUB1 N-terminal domain-containing protein.
     
 0.647
H3GCL4_PHYRM
Uncharacterized protein.
    
  0.635
H3G5Z9_PHYRM
40S ribosomal protein S27.
   
 
 0.620
H3G6M4_PHYRM
Protein kinase domain-containing protein.
    
 0.615
H3GSZ7_PHYRM
Serine/threonine-protein kinase PLK.
    
 0.615
H3GLN1_PHYRM
SANT domain-containing protein.
    
 0.592
H3GA30_PHYRM
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.583
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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