STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3HDJ6_PHYRMHelicase ATP-binding domain-containing protein. (520 aa)    
Predicted Functional Partners:
H3GG22_PHYRM
Uncharacterized protein.
    
 0.888
H3H027_PHYRM
Uncharacterized protein.
  
 
 0.843
H3H4G2_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.840
H3GU44_PHYRM
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.827
H3GRN6_PHYRM
Uncharacterized protein.
  
 
 0.814
H3G8J2_PHYRM
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.813
H3G5H3_PHYRM
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.812
H3GIR9_PHYRM
Nudix hydrolase domain-containing protein.
   
 
 0.808
H3G6J0_PHYRM
Uncharacterized protein.
  
 
 0.804
H3HEF9_PHYRM
Uncharacterized protein.
    
 
 0.798
Your Current Organism:
Phytophthora ramorum
NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.