STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JGI1_01315Unannotated protein; Belongs to the Fur family. (132 aa)    
Predicted Functional Partners:
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.858
JGI1_01321
Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.804
JGI1_01030
Unannotated protein.
  
 
 0.753
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.739
rpoC
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.736
JGI1_01314
Unannotated protein.
  
    0.707
JGI1_01318
Unannotated protein.
     
 0.670
JGI1_01313
Unannotated protein; Belongs to the Dps family.
     
 0.631
JGI1_01311
Unannotated protein.
  
  
 0.626
JGI1_01728
Unannotated protein.
  
    0.599
Your Current Organism:
Thermokryptus mobilis
NCBI taxonomy Id: 1643428
Other names: C. Thermokryptus mobilis, Candidatus Thermokryptus mobilis, bacterium JGI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.