APA66257.1 protein (Maribacter sp. 12014MBLMicDiv)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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[Homology]

Score

APA66257.1

RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)

Predicted Functional Partners:

APA63483.1

0.908

APA63484.1

0.889

APA63468.1

0.764

APA65581.1

0.760

APA66266.1

0.756

APA65582.1

0.751

APA63011.1

0.748

APA65921.1

0.748

APA63465.1

0.714

APA65517.1

0.692

Your Current Organism:

Maribacter sp. 12014MBLMicDiv

NCBI taxonomy Id: 1644130
Other names: M. sp. 1_2014MBL_MicDiv, Maribacter sp. 1_2014MBL_MicDiv

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APA63011.1	APA63468.1	YQ22_00820	YQ22_03540	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APA63011.1	APA65517.1	YQ22_00820	YQ22_15060	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
APA63011.1	APA65921.1	YQ22_00820	YQ22_17360	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APA63011.1	APA66257.1	YQ22_00820	YQ22_03630	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APA63011.1	APA66266.1	YQ22_00820	YQ22_04105	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
APA63465.1	APA63468.1	YQ22_03525	YQ22_03540	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
APA63465.1	APA65582.1	YQ22_03525	YQ22_15420	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
APA63465.1	APA65921.1	YQ22_03525	YQ22_17360	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
APA63465.1	APA66257.1	YQ22_03525	YQ22_03630	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
APA63465.1	APA66266.1	YQ22_03525	YQ22_04105	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
APA63468.1	APA63011.1	YQ22_03540	YQ22_00820	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APA63468.1	APA63465.1	YQ22_03540	YQ22_03525	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
APA63468.1	APA65517.1	YQ22_03540	YQ22_15060	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
APA63468.1	APA65582.1	YQ22_03540	YQ22_15420	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
APA63468.1	APA65921.1	YQ22_03540	YQ22_17360	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
APA63468.1	APA66257.1	YQ22_03540	YQ22_03630	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
APA63468.1	APA66266.1	YQ22_03540	YQ22_04105	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APA63483.1	APA63484.1	YQ22_03620	YQ22_03625	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
APA63483.1	APA66257.1	YQ22_03620	YQ22_03630	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
APA63484.1	APA63483.1	YQ22_03625	YQ22_03620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939